Detailed information of SNP:
|
SNP ID:
sf0612028846(Gbrowse)
Chromosome: chr06 Position: 12028846 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 97.50% | 2.50% |
| All Indica | 792 | 99.37% | 0.63% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 60 | 58.33% | 41.67% |
| Indica I | 371 | 98.65% | 1.35% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612028846 | G->A | INTERGENIC | None |