Detailed information of SNP:
|
SNP ID:
sf0612032837(Gbrowse)
Chromosome: chr06 Position: 12032837 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 62.20% | 37.80% |
| All Indica | 798 | 93.73% | 6.27% |
| All Japonica | 497 | 7.24% | 92.76% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 94.39% | 5.61% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612032837 | C->T | INTERGENIC | None |