Detailed information of SNP:
|
SNP ID:
sf0612035185(Gbrowse)
Chromosome: chr06 Position: 12035185 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 54.62% | 45.38% |
| All Indica | 797 | 85.95% | 14.05% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 95.72% | 4.28% |
| Indica II | 213 | 71.83% | 28.17% |
| Indica Intermediate | 210 | 82.86% | 17.14% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612035185 | C->T | LOC_Os06g20840(LOC_Os06g20840.1) | INTRON |