Detailed information of SNP:
|
SNP ID:
sf0612042734(Gbrowse)
Chromosome: chr06 Position: 12042734 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 55.26% | 44.74% |
| All Indica | 799 | 86.86% | 13.14% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612042734 | G->A | INTERGENIC | None |