Detailed information of SNP:
|
SNP ID:
sf0612043619(Gbrowse)
Chromosome: chr06 Position: 12043619 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 55.51% | 44.49% |
| All Indica | 798 | 86.97% | 13.03% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 210 | 78.10% | 21.90% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612043619 | G->A | INTERGENIC | None |