Detailed information of SNP:
|
SNP ID:
sf0612049112(Gbrowse)
Chromosome: chr06 Position: 12049112 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 92.24% | 7.76% |
| All Indica | 798 | 89.22% | 10.78% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 93.32% | 6.68% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612049112 | G->A | INTERGENIC | None |