Detailed information of SNP:
SNP ID:
sf0612050677(Gbrowse)
Chromosome: chr06 Position: 12050677 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1418 | 96.19% | 3.81% |
All Indica | 798 | 93.61% | 6.39% |
All Japonica | 497 | 99.40% | 0.60% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 374 | 97.59% | 2.41% |
Indica II | 213 | 93.90% | 6.10% |
Indica Intermediate | 211 | 86.26% | 13.74% |
Temperate Japonica | 335 | 99.70% | 0.30% |
Tropical Japonica | 94 | 97.87% | 2.13% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0612050677 | T->G | LOC_Os06g20860(LOC_Os06g20860.1) | Synonymous |