Detailed information of SNP:
|
SNP ID:
sf0612055791(Gbrowse)
Chromosome: chr06 Position: 12055791 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 57.20% | 42.80% |
| All Indica | 799 | 87.11% | 12.89% |
| All Japonica | 497 | 6.24% | 93.76% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612055791 | C->T | LOC_Os06g20870(LOC_Os06g20870.1) | Non-Synonymous SNP |