Detailed information of SNP:
|
SNP ID:
sf0612070256(Gbrowse)
Chromosome: chr06 Position: 12070256 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1218 | 91.95% | 8.05% |
| All Indica | 669 | 90.73% | 9.27% |
| All Japonica | 494 | 95.14% | 4.86% |
| Aus | 14 | 50.00% | 50.00% |
| Indica I | 315 | 95.87% | 4.13% |
| Indica II | 176 | 90.91% | 9.09% |
| Indica Intermediate | 178 | 81.46% | 18.54% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 81.72% | 18.28% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 2 | 0.00% | 100.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612070256 | T->C | INTERGENIC | None |