Detailed information of SNP:
|
SNP ID:
sf0612077080(Gbrowse)
Chromosome: chr06 Position: 12077080 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 88.50% | 11.50% |
| All Indica | 799 | 90.49% | 9.51% |
| All Japonica | 495 | 95.15% | 4.85% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 80.65% | 19.35% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612077080 | C->T | LOC_Os06g20900(LOC_Os06g20900.1) | INTRON |