Detailed information of SNP:
|
SNP ID:
sf0612085047(Gbrowse)
Chromosome: chr06 Position: 12085047 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 51.27% | 48.73% |
| All Indica | 796 | 87.81% | 12.19% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 374 | 90.64% | 9.36% |
| Indica II | 212 | 90.57% | 9.43% |
| Indica Intermediate | 210 | 80.00% | 20.00% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612085047 | T->C | LOC_Os06g20920(LOC_Os06g20920.1) | INTRON |
| sf0612085047 | T->C | LOC_Os06g20920(LOC_Os06g20920.2) | INTRON |