Detailed information of SNP:
|
SNP ID:
sf0612091829(Gbrowse)
Chromosome: chr06 Position: 12091829 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 52.78% | 47.22% |
| All Indica | 799 | 87.98% | 12.02% |
| All Japonica | 497 | 5.03% | 94.97% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 90.67% | 9.33% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612091829 | C->T | INTERGENIC | None |