Detailed information of SNP:
|
SNP ID:
sf0612099814(Gbrowse)
Chromosome: chr06 Position: 12099814 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1204 | 88.62% | 11.38% |
| All Indica | 791 | 97.98% | 2.02% |
| All Japonica | 294 | 60.20% | 39.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 98.92% | 1.08% |
| Indica II | 211 | 97.16% | 2.84% |
| Indica Intermediate | 208 | 97.12% | 2.88% |
| Temperate Japonica | 180 | 47.78% | 52.22% |
| Tropical Japonica | 67 | 86.57% | 13.43% |
| Japonica Intermediate | 47 | 70.21% | 29.79% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612099814 | T->C | INTERGENIC | None |