Detailed information of SNP:
|
SNP ID:
sf0612104146(Gbrowse)
Chromosome: chr06 Position: 12104146 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 50.00% | 50.00% |
| All Indica | 796 | 85.68% | 14.32% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 373 | 88.74% | 11.26% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 210 | 78.10% | 21.90% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612104146 | C->T | INTERGENIC | None |