Detailed information of SNP:
|
SNP ID:
sf0612111237(Gbrowse)
Chromosome: chr06 Position: 12111237 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 57.36% | 42.64% |
| All Indica | 787 | 88.95% | 11.05% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 367 | 88.83% | 11.17% |
| Indica II | 212 | 89.15% | 10.85% |
| Indica Intermediate | 208 | 88.94% | 11.06% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612111237 | A->G | INTERGENIC | None |