Detailed information of SNP:
|
SNP ID:
sf0612192500(Gbrowse)
Chromosome: chr06 Position: 12192500 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 62.62% | 37.38% |
| All Indica | 798 | 94.99% | 5.01% |
| All Japonica | 497 | 6.04% | 93.96% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 95.45% | 4.55% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612192500 | A->G | INTERGENIC | None |