Detailed information of SNP:
|
SNP ID:
sf0612238921(Gbrowse)
Chromosome: chr06 Position: 12238921 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1325 | 71.25% | 28.75% |
| All Indica | 727 | 53.23% | 46.77% |
| All Japonica | 485 | 98.56% | 1.44% |
| Aus | 58 | 55.17% | 44.83% |
| Indica I | 344 | 47.67% | 52.33% |
| Indica II | 199 | 62.81% | 37.19% |
| Indica Intermediate | 184 | 53.26% | 46.74% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 87 | 95.40% | 4.60% |
| Japonica Intermediate | 63 | 98.41% | 1.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612238921 | C->T | LOC_Os06g21180(LOC_Os06g21180.1) | Synonymous |