Detailed information of SNP:
|
SNP ID:
sf0612269092(Gbrowse)
Chromosome: chr06 Position: 12269092 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 50.78% | 49.22% |
| All Indica | 793 | 20.55% | 79.45% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 370 | 14.05% | 85.95% |
| Indica II | 213 | 29.11% | 70.89% |
| Indica Intermediate | 210 | 23.33% | 76.67% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612269092 | T->C | INTERGENIC | None |