Detailed information of SNP:
|
SNP ID:
sf0612289453(Gbrowse)
Chromosome: chr06 Position: 12289453 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1350 | 58.15% | 41.85% |
| All Indica | 737 | 89.82% | 10.18% |
| All Japonica | 497 | 6.04% | 93.96% |
| Aus | 61 | 91.80% | 8.20% |
| Indica I | 344 | 87.21% | 12.79% |
| Indica II | 199 | 90.95% | 9.05% |
| Indica Intermediate | 194 | 93.30% | 6.70% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612289453 | T->C | INTERGENIC | None |