Detailed information of SNP:
|
SNP ID:
sf0612509077(Gbrowse)
Chromosome: chr06 Position: 12509077 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 52.44% | 47.56% |
| All Indica | 793 | 81.59% | 18.41% |
| All Japonica | 497 | 4.23% | 95.77% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 370 | 79.46% | 20.54% |
| Indica II | 212 | 86.79% | 13.21% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612509077 | G->A | INTERGENIC | None |