Detailed information of SNP:
|
SNP ID:
sf0612516052(Gbrowse)
Chromosome: chr06 Position: 12516052 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1347 | 54.12% | 45.88% |
| All Indica | 731 | 27.77% | 72.23% |
| All Japonica | 496 | 96.17% | 3.83% |
| Aus | 64 | 25.00% | 75.00% |
| Indica I | 343 | 34.99% | 65.01% |
| Indica II | 199 | 18.59% | 81.41% |
| Indica Intermediate | 189 | 24.34% | 75.66% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612516052 | G->A | INTERGENIC | None |