Detailed information of SNP:
|
SNP ID:
sf0612525874(Gbrowse)
Chromosome: chr06 Position: 12525874 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 60.88% | 39.12% |
| All Indica | 799 | 94.62% | 5.38% |
| All Japonica | 497 | 4.83% | 95.17% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612525874 | T->C | INTERGENIC | None |