Detailed information of SNP:
|
SNP ID:
sf0612531193(Gbrowse)
Chromosome: chr06 Position: 12531193 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 50.50% | 49.50% |
| All Indica | 779 | 20.41% | 79.59% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 363 | 24.24% | 75.76% |
| Indica II | 210 | 10.48% | 89.52% |
| Indica Intermediate | 206 | 23.79% | 76.21% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612531193 | G->A | INTERGENIC | None |