Detailed information of SNP:
|
SNP ID:
sf0612543929(Gbrowse)
Chromosome: chr06 Position: 12543929 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1371 | 93.07% | 6.93% |
| All Indica | 757 | 88.11% | 11.89% |
| All Japonica | 494 | 99.60% | 0.40% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 364 | 95.88% | 4.12% |
| Indica II | 205 | 85.85% | 14.15% |
| Indica Intermediate | 188 | 75.53% | 24.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612543929 | T->C | LOC_Os06g21700(LOC_Os06g21700.1) | Non-Synonymous SNP |