Detailed information of SNP:
|
SNP ID:
sf0612544908(Gbrowse)
Chromosome: chr06 Position: 12544908 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 97.47% | 2.53% |
| All Indica | 774 | 95.61% | 4.39% |
| All Japonica | 489 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 98.64% | 1.36% |
| Indica II | 205 | 94.63% | 5.37% |
| Indica Intermediate | 200 | 91.00% | 9.00% |
| Temperate Japonica | 329 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612544908 | C->T | LOC_Os06g21700(LOC_Os06g21700.1) | Non-Synonymous SNP |