Detailed information of SNP:
|
SNP ID:
sf0612545147(Gbrowse)
Chromosome: chr06 Position: 12545147 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1366 | 91.58% | 8.42% |
| All Indica | 750 | 87.07% | 12.93% |
| All Japonica | 496 | 97.38% | 2.62% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 361 | 96.40% | 3.60% |
| Indica II | 204 | 84.31% | 15.69% |
| Indica Intermediate | 185 | 71.89% | 28.11% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612545147 | T->C | LOC_Os06g21700(LOC_Os06g21700.1) | Synonymous |