Detailed information of SNP:
|
SNP ID:
sf0612562053(Gbrowse)
Chromosome: chr06 Position: 12562053 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 55.97% | 44.03% |
| All Indica | 797 | 86.20% | 13.80% |
| All Japonica | 496 | 4.44% | 95.56% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 374 | 85.56% | 14.44% |
| Indica II | 212 | 90.57% | 9.43% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 93 | 9.68% | 90.32% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612562053 | A->G | LOC_Os06g21740(LOC_Os06g21740.1) | Non-Synonymous SNP |