Detailed information of SNP:
|
SNP ID:
sf0612562712(Gbrowse)
Chromosome: chr06 Position: 12562712 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 60.34% | 39.66% |
| All Indica | 798 | 93.61% | 6.39% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612562712 | T->C | LOC_Os06g21740(LOC_Os06g21740.1) | INTRON |