Detailed information of SNP:
|
SNP ID:
sf0612570544(Gbrowse)
Chromosome: chr06 Position: 12570544 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 56.52% | 43.48% |
| All Indica | 799 | 94.99% | 5.01% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612570544 | G->A | INTERGENIC | None |