Detailed information of SNP:
|
SNP ID:
sf0612585291(Gbrowse)
Chromosome: chr06 Position: 12585291 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 50.11% | 49.89% |
| All Indica | 791 | 22.12% | 77.88% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 369 | 25.20% | 74.80% |
| Indica II | 212 | 19.34% | 80.66% |
| Indica Intermediate | 210 | 19.52% | 80.48% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612585291 | T->C | LOC_Os06g21780(LOC_Os06g21780.1) | Synonymous |