Detailed information of SNP:



SNP ID: sf0612585291(Gbrowse)

Chromosome: chr06

Position: 12585291
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1411 50.11% 49.89%
All Indica791 22.12% 77.88%
All Japonica497 96.38% 3.62%
Aus67 31.34% 68.66%
Indica I369 25.20% 74.80%
Indica II212 19.34% 80.66%
Indica Intermediate210 19.52% 80.48%
Temperate Japonica335 99.10% 0.90%
Tropical Japonica94 92.55% 7.45%
Japonica Intermediate68 88.24% 11.76%
Group VI/Aromatic14 57.14% 42.86%
Intermediate42 57.14% 42.86%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0612585291 T->C LOC_Os06g21780(LOC_Os06g21780.1) Synonymous