Detailed information of SNP:
|
SNP ID:
sf0612585823(Gbrowse)
Chromosome: chr06 Position: 12585823 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 50.18% | 49.82% |
| All Indica | 791 | 78.13% | 21.87% |
| All Japonica | 497 | 3.82% | 96.18% |
| Aus | 65 | 67.69% | 32.31% |
| Indica I | 370 | 74.86% | 25.14% |
| Indica II | 212 | 81.60% | 18.40% |
| Indica Intermediate | 209 | 80.38% | 19.62% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612585823 | T->C | LOC_Os06g21780(LOC_Os06g21780.1) | Non-Synonymous SNP |