Detailed information of SNP:
|
SNP ID:
sf0612611602(Gbrowse)
Chromosome: chr06 Position: 12611602 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 60.66% | 39.34% |
| All Indica | 797 | 95.23% | 4.77% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 66 | 71.21% | 28.79% |
| Indica I | 374 | 95.99% | 4.01% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612611602 | T->G | INTERGENIC | None |