Detailed information of SNP:
|
SNP ID:
sf0612612335(Gbrowse)
Chromosome: chr06 Position: 12612335 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 60.13% | 39.87% |
| All Indica | 793 | 93.69% | 6.31% |
| All Japonica | 496 | 4.84% | 95.16% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 372 | 94.35% | 5.65% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 208 | 93.27% | 6.73% |
| Temperate Japonica | 334 | 1.20% | 98.80% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612612335 | A->G | INTERGENIC | None |