Detailed information of SNP:
|
SNP ID:
sf0612637167(Gbrowse)
Chromosome: chr06 Position: 12637167 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1400 | 92.14% | 7.86% |
| All Indica | 785 | 92.87% | 7.13% |
| All Japonica | 492 | 98.78% | 1.22% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 368 | 95.38% | 4.62% |
| Indica II | 210 | 91.43% | 8.57% |
| Indica Intermediate | 207 | 89.86% | 10.14% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 91 | 95.60% | 4.40% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612637167 | T->G | INTERGENIC | None |