Detailed information of SNP:
|
SNP ID:
sf0612766307(Gbrowse)
Chromosome: chr06 Position: 12766307 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 63.98% | 36.02% |
| All Indica | 799 | 97.50% | 2.50% |
| All Japonica | 496 | 6.45% | 93.55% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 93 | 18.28% | 81.72% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 60.53% | 39.47% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612766307 | A->G | INTERGENIC | None |