Detailed information of SNP:
|
SNP ID:
sf0612804325(Gbrowse)
Chromosome: chr06 Position: 12804325 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 63.35% | 36.65% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 497 | 5.63% | 94.37% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 7.46% | 92.54% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612804325 | G->A | INTERGENIC | None |