Detailed information of SNP:
|
SNP ID:
sf0612812819(Gbrowse)
Chromosome: chr06 Position: 12812819 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 96.50% | 3.50% |
| All Indica | 797 | 97.24% | 2.76% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 53 | 50.94% | 49.06% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612812819 | C->T | INTERGENIC | None |