Detailed information of SNP:
|
SNP ID:
sf0612830565(Gbrowse)
Chromosome: chr06 Position: 12830565 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 56.88% | 43.12% |
| All Indica | 798 | 90.98% | 9.02% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 374 | 92.51% | 7.49% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612830565 | C->T | INTERGENIC | None |