Detailed information of SNP:
|
SNP ID:
sf0612879472(Gbrowse)
Chromosome: chr06 Position: 12879472 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1378 | 65.97% | 34.03% |
| All Indica | 799 | 97.87% | 2.13% |
| All Japonica | 456 | 7.02% | 92.98% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 308 | 2.92% | 97.08% |
| Tropical Japonica | 85 | 16.47% | 83.53% |
| Japonica Intermediate | 63 | 14.29% | 85.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612879472 | G->C | INTERGENIC | None |