Detailed information of SNP:
|
SNP ID:
sf0612890259(Gbrowse)
Chromosome: chr06 Position: 12890259 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 57.15% | 42.85% |
| All Indica | 799 | 96.37% | 3.63% |
| All Japonica | 497 | 2.82% | 97.18% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612890259 | G->A | LOC_Os06g22220(LOC_Os06g22220.1) | INTRON |
| sf0612890259 | G->A | LOC_Os06g22220(LOC_Os06g22220.1) | SNPs that disrupt splice sites |