Detailed information of SNP:
|
SNP ID:
sf0612890414(Gbrowse)
Chromosome: chr06 Position: 12890414 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 56.59% | 43.41% |
| All Indica | 799 | 96.25% | 3.75% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612890414 | G->T | LOC_Os06g22220(LOC_Os06g22220.1) | Non-Synonymous SNP |