Detailed information of SNP:



SNP ID: sf0612893298(Gbrowse)

Chromosome: chr06

Position: 12893298
Major allele: T

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1419 57.58% 42.42%
All Indica799 97.62% 2.38%
All Japonica497 1.61% 98.39%
Aus67 5.97% 94.03%
Indica I375 97.87% 2.13%
Indica II213 96.71% 3.29%
Indica Intermediate211 98.10% 1.90%
Temperate Japonica335 1.19% 98.81%
Tropical Japonica94 2.13% 97.87%
Japonica Intermediate68 2.94% 97.06%
Group VI/Aromatic14 42.86% 57.14%
Intermediate42 45.24% 54.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0612893298 C->T LOC_Os06g22230(LOC_Os06g22230.1) Synonymous