Detailed information of SNP:
|
SNP ID:
sf0612895543(Gbrowse)
Chromosome: chr06 Position: 12895543 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 57.58% | 42.42% |
| All Indica | 799 | 97.62% | 2.38% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612895543 | C->T | LOC_Os06g22230(LOC_Os06g22230.1) | Synonymous |