Detailed information of SNP:
|
SNP ID:
sf0612901026(Gbrowse)
Chromosome: chr06 Position: 12901026 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1374 | 59.39% | 40.61% |
| All Indica | 755 | 30.20% | 69.80% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 350 | 37.14% | 62.86% |
| Indica II | 203 | 20.20% | 79.80% |
| Indica Intermediate | 202 | 28.22% | 71.78% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612901026 | T->G | INTERGENIC | None |