Detailed information of SNP:
|
SNP ID:
sf0612901522(Gbrowse)
Chromosome: chr06 Position: 12901522 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 52.30% | 47.70% |
| All Indica | 793 | 88.65% | 11.35% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 374 | 90.37% | 9.63% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 206 | 80.58% | 19.42% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612901522 | G->A | INTERGENIC | None |