Detailed information of SNP:
|
SNP ID:
sf0612913788(Gbrowse)
Chromosome: chr06 Position: 12913788 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1318 | 78.07% | 21.93% |
| All Indica | 699 | 59.80% | 40.20% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 327 | 60.86% | 39.14% |
| Indica II | 180 | 44.44% | 55.56% |
| Indica Intermediate | 192 | 72.40% | 27.60% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612913788 | A->T | INTERGENIC | None |