Detailed information of SNP:
|
SNP ID:
sf0612944612(Gbrowse)
Chromosome: chr06 Position: 12944612 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 51.66% | 48.34% |
| All Indica | 799 | 87.11% | 12.89% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 89.33% | 10.67% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612944612 | A->T | LOC_Os06g22300(LOC_Os06g22300.1) | INTRON |