Detailed information of SNP:
|
SNP ID:
sf0612955045(Gbrowse)
Chromosome: chr06 Position: 12955045 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 61.09% | 38.91% |
| All Indica | 797 | 96.86% | 3.14% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612955045 | T->C | INTERGENIC | None |