Detailed information of SNP:
|
SNP ID:
sf0612968760(Gbrowse)
Chromosome: chr06 Position: 12968760 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 53.63% | 46.37% |
| All Indica | 799 | 90.11% | 9.89% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612968760 | G->C | INTERGENIC | None |