Detailed information of SNP:
|
SNP ID:
sf0612979758(Gbrowse)
Chromosome: chr06 Position: 12979758 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 60.25% | 39.75% |
| All Indica | 799 | 95.37% | 4.63% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612979758 | C->T | INTERGENIC | None |